PTM Viewer PTM Viewer

AT3G08590.1

Arabidopsis thaliana [ath]

Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent

29 PTM sites : 8 PTM types

PLAZA: AT3G08590
Gene Family: HOM05D002934
Other Names: 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2; iPGAM2

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
nt G 2 GSSGDVNWKLA99
GSSGDVNWKL92
nta G 2 GSSGDVNWKLA99
GSSGDVNWKL92
GSSGDVNWK6
ph S 3 GSSGDVNWK114
so C 41 TIGLIVLDGWGESDPDQYNCIHK110
ph S 75 AHGTAVGLPSEDDMGNSEVGHNALGAGR83
109
114
nt D 77 DDMGNSEVGHNALGAGRIYAQGAKLV167b
ph S 82 LIKAHGTAVGLPSEDDMGNSEVGHNALGAGR45
AHGTAVGLPSEDDMGNSEVGHNALGAGR18a
26
32
39
41
44
45
46
48
83
84a
84b
85
88
94
97
100
106
109
111a
111b
111c
111d
114
ub K 118 IYEDEGFKYISQSFEK168
nt S 136 SDGGVHSRLDQVQLLL167b
ub K 195 AKGVDAQVASGGGR40
168
nt G 196 GVDAQVASGGGR51c
ac K 239 FKSALEAVK101
ac K 246 SALEAVKTLR101
ub K 246 SALEAVKTLR168
ac K 301 ALEYKDFDKFDR101
ub K 301 ALEYKDFDKFDR168
nt S 335 SPPLIDRTSGEY167b
ph S 335 YLVSPPLIDR114
nt T 342 TSGEYLAHNGVR167b
ox C 357 TFACSETVK47
138b
sno C 357 TFACSETVK169
so C 357 TFACSETVK110
ph S 375 SGYFNEK109
ac K 410 ALEIAEKAR101
ub K 410 ALEIAEKAR168
ub K 419 DAILSGKFDQVR40
so C 446 VNLPNGDMVGHTGDIEATVVACEAADR110
nt Q 462 QVGGIYVVTADHGNAE119
ac K 481 GIYVVTADHGNAEDMVKR101

Sequence

Length: 560

MGSSGDVNWKLADHPKLPKGKTIGLIVLDGWGESDPDQYNCIHKAPTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFKYISQSFEKGTVHLIGLLSDGGVHSRLDQVQLLLKGFAERGAKRIRVHILTDGRDVLDGSSVGFVETLEADLAALRAKGVDAQVASGGGRMYVTMDRYENDWSVVKRGWDAQVLGEAPHKFKSALEAVKTLRAEPGANDQYLPSFVIVDDNGKAVGPIVDGDAVVTFNFRADRMVMHAKALEYKDFDKFDRVRVPDIRYAGMLQYDGELKLPSRYLVSPPLIDRTSGEYLAHNGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGISFNVQPKMKALEIAEKARDAILSGKFDQVRVNLPNGDMVGHTGDIEATVVACEAADRAVRTILDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPALDKEGNLQILTSHTLKPVPIAIGGPGLSAGVRFRQDIETPGLANVAATVMNLHGFVAPSDYETSLIEVVEK

ID PTM Type Color
nt N-terminus Proteolysis X
nta N-terminal Acetylation X
ph Phosphorylation X
so S-sulfenylation X
ub Ubiquitination X
ac Acetylation X
ox Reversible Cysteine Oxidation X
sno S-nitrosylation X
Multiple types X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR006124 22 544
IPR011258 103 323
Sites
Show Type Position
Site 82
Active Site 29
Active Site 82
Active Site 472
Active Site 473
Active Site 141
Active Site 171
Active Site 207
Active Site 214
Active Site 287
Active Site 362
Active Site 431
Active Site 435
Active Site 502

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
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